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This is a complete walkthrough video about 3D modeling a plant roots, Arabidopsis) using Macroscopic Solutions Macropod PRO 3D focus stacking and photogrammetry system. The specimen is cultured in a plastic cuvette in agar and is the test subject for experiments to be conducted in zero gravity. Mark details methods to efficiently photograph, batch focus stack, post process and assemble the 3D model using Agisoft Metashape. Mark also demonstrates how to add a scalebar to the model.